In this tutorial, we will cover the steps to install RELATE on OpenSUSE Latest. RELATE is a software tool for estimating the ancestral recombination graph (ARG) from a sample of DNA sequences. The software is available for download from https://documen.tician.de/relate/.
Before installing RELATE, you need to ensure that your system meets the following prerequisites:
Open a terminal window on your OpenSUSE Latest system.
Install the required Python libraries by running the following command:
sudo zypper install python3-numpy python3-matplotlib python3-scipy
Install the C and C++ compilers by running the following command:
sudo zypper install gcc-c++ gcc
Install git by running the following command:
sudo zypper install git
Clone the RELATE repository by running the following command:
git clone --recursive https://github.com/timothyfleming/relate.git
Change to the RELATE directory by running the following command:
cd relate/
Compile the RELATE source code by running the following command:
make
This will create the RELATE executable file in the bin/ directory.
Test the installation by running the following command:
bin/relate --help
This should display the help menu for the RELATE software.
You can now use RELATE on your OpenSUSE Latest system by running the bin/relate command with appropriate flags and input files.
Congratulations! You have successfully installed RELATE on your OpenSUSE Latest system. You can now use RELATE to estimate the ancestral recombination graph from a sample of DNA sequences.
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